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Isolation, Phylogenetic Inferences, and Early Diversification of Xylella fastidiosa subsp. fastidiosa in Cova da Beira Region, Portugal

Authors: Eva Garcia, Alexandra K. Kahn, Cristina Rodrigues, Alexandra Camelo, Christophe Espírito-Santo, Helvecio D. Coletta-Filho, Rodrigo P. P. Almeida, and Joana Costa
Date Published: 01/08/2025
Keywords: Epidemiology | Genomic
DOI: https://doi.org/10.1094/PHYTO-01-25-0009-R
Repository link: http://hdl.handle.net/10261/402714

Abstract

The introduction of Xylella fastidiosa, a plant pathogen with a broad host range, poses a significant threat to agriculture and natural ecosystems. We analyzed six X. fastidiosa subsp. fastidiosa strains obtained from the Beira Interior region of Portugal, an area known for fruit production. Whole-genome sequencing and phylogenetic analyses were performed to genetically characterize these strains and determine their origin. The results suggest that these outbreak-demarcated areas originated from a single introduction event traced back to California, United States. All six strains belong to subspecies fastidiosa, sequence type 1, which has been reported to infect a variety of economically important crops, including cherry, plum, almond, and grapevine. A molecular clock analysis estimated that the introduction occurred between 2010 and 2020 (95% highest posterior density 1999 to 2022), with the strains forming a clade that diverged circa 2020. The findings underscore the importance of continued surveillance in both agricultural and unmanaged ecosystems, as the presence and potential impact of X. fastidiosa on Portuguese landscapes remain largely unknown.

Landscape and environmental drivers of plant health decline during an active invasion of Xylella fastidiosa Wells et al. in Mediterranean agroecosystems

Authors: Ricardo Enrique Hernández-Lambraño, Francisco José Ruiz-Gómez, Montserrat Vilà, Blanca B. Landa, Rocío Hernández-Clemente, María Fernández-Bravo, Enrique Quesada-Moraga, Concepción Olivares-Garcia, Pablo González-Moreno

Date: 27/08/26

Invasive plant pathogens, such as Xylella fastidiosa (Xf), pose a major threat to global agricultural and natural ecosystems, yet their impacts are rarely assessed across agro–natural interfaces where plant diversity, landscape structure and environmental stress...

A metabolic model based on a pangenome core reveals putative conserved biochemical features of the phytopathogen Xylella fastidiosa

Authors: Paola Corbín-Agustí a , Miguel Álvarez-Herrera a , Miguel Román-Écija b , Patricia Álvarez a , Marta Tortajada c , Blanca B. Landa b , Juli Peretó a d

Date: 11/07/26

Xylella fastidiosa is a xylem-limited phytopathogenic bacterium responsible for severe diseases in many economically important crops. Despite its impact, its metabolism remains poorly characterized due to fastidious growth and the limited availability of defined...